Release Notes for

ENTERPRISE BIOLOGY SOFTWARE 2007 (Version 7.0)

© Copyright 2001 - 2008 Robert P. Bolender and Licensors

All rights reserved.

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 Description of the Software

 The Enterprise Biology Software (EBS 2007; Version 7.0) includes:

·        UNIVERSAL BIOLOGY DATABASE 3.0 (UBD)

·        Database Upgrades (2007)

·     Stereology Literature Database

·     Universal Biology Database

 

Before you begin, you need:

Software: Enterprise Biology Software 2007: Universal Biology Database CD

CD or DVD/CD Drive: To install the program

Processor: Intel Pentium (III) or higher personal computer

RAM: 500 MB (minimum) – 1GB of memory (recommended)

Disk space: Universal Biology Database 3.0: 223 MB of hard disk space on the C drive

OS: Microsoft Windows 95, 98, 98SE, Me, 2000, NT 4.0, XP, or Vista

Resolution: 1280 by 1024 pixels (right click desktop Properties/Settings)

Display Properties: Appearance tab - set Scheme to Windows Standard

Color Depth: High Color or True Color (recommended)

Font Size: Small

 

Installation Overview

A relational database is installed in a client/server configuration.  The software uses a runtime database engine (rtdsk50.exe) that connects a user interface to a backend server.  Most of the database programs employ a “query by example” interface.  During the installation, the client/server configuration will be set up automatically on the target computer.  The Uninstall program removes all traces of the original installation.

 

Installation

Install the Universal Biology Database Software (2007) from the CD

·        Step 1: Put the UBD CD in the center ring (80 mm) ring of the CD drive, close the door, and the installation starts automatically.  Run the installation program. 

·        Step 2: Install Adobe Acrobat Reader 8.0.  On the opening screen of the Universal Biology Database (main menu), click on install reader.  Follow the directions.

·        Step 3:  Change the “Default file location” in Excel.  Run Excel.  Click on Tools and select options… .  When the Options screen opens, select the tab marked General, and change the Default file location: to <C:\Program Files\EBSTicket 2007\Files>, as shown below.

               

 

Troubleshooting the installation 

Since the installation is based on the Windows Installer Program, it should be unremarkable. 

·        Problems that do appear most likely will be the result of not setting the resolution (1280 by 1024 pixels), color (High Color or True Color), or font size (Small) as recommended.

·        It is also a good idea during the installation to have no open applications and no applications running in the background (this includes anti-virus software, crash monitoring software, and system diagnostic software).

 

Uninstall the Universal Biology Database Software

Press the Start button on the toolbar; select Programs, EBS Ticket 2007, and Uninstall EBS Ticket.  This is the recommended procedure.  Alternatively, the programs can be removed from the control panel.

 

Running the Enterprise Biology Software

Starting the Universal Biology Database program

To start the program, double click the EBS Ticket 2007 icon or start it from the program list - Start/programs/EBS Ticket 2007.

Selecting programs

In the opening screen, select an item in the menu.  Adobe Reader 8.0 must be installed to view the PDF text files and the path for Excel set to interact with calculation worksheets.

 

Technical Issues

Program notes

·        The default paper size for printing is 8.5 x 14 inches (Legal). 

·        A sort button (usually a radio button) often has two functions (left mouse click = ascending; right mouse click = descending or ascending + remove blanks)

·        Some of the programs are large and may require long loading times, depending on the memory of the client computer. 

·        When a command button has a thick border, is can be "clicked" by pressing the Enter key.   

Known problems

·        The quality of the display depends importantly on the recommended settings for resolution, color depth, and font size.  Most display problems can be fixed by following the directions given above (See: Before you begin…).

·        The new screen resolution (1280 by 1024 pixels) may cause a problem on older computers.  If the screen becomes partially obscured, right click on the heading of main screen to view the menu buttons. 

·        Installing the new software (2007) changes the ODBC setting for the database.  This may interfere with earlier programs using the same database.  The fix is to reinstall the older program.

 

UNIVERSAL BIOLOGY DATABASE 3.0 2007/8

Window Name (as it appears in on the screen)

Program (.exe) or File (.pdf)

Notes

UNIVERSAL BIOLOGY DATABASE

UBD_2007hr.exe

Enterprise Biology Software 2007

1. Progress Report 2007/2008

 

Progress report for 2007/8

    2007

Paper2007.pdf

Progress report for 2007

    2006

Paper2006.pdf

Progress report for 2006

    2005

Paper2005.pdf

Progress report for 2005

    2004

Paper2004.pdf

Progress report for 2004

    2003

Paper2003.pdf

Progress report for 2003

    2002

Paper2002.pdf

Progress report for 2002

    2001A

Paper2001B.pdf

Progress report for 2001

    2001B

Paper2001A.pdf

Progress report for 2001

    Read

Read1,pdf

Introduction / Help

2. Find Papers

 

Universal biology database

    By citation

Ubd_cit_listhr.exe

Find papers by citation et cetera

    By method

Ubd_ui3hr.exe

Find papers by methods

    By data - control

Ubd_ui5hr.exe

Find papers by control data

    By data - experimental

Ubd_ui6hr.exe

Find papers by experimental data

    Standardized paper - control

Elec_c1hr.exe

Standardized paper

    Standardized paper - experimental

Elec_e1hr.exe

Standardized paper

    Read

Read2.pdf

Introduction / Help

3. Data & Equations

 

 

    Data pair table

Ubd_ui7hr.exe

View, sort, and filter data pairs

    SQL - control

Ubd_ui1hr.exe

Find control data patterns

    SQL – experimental

Ubd_ui1ehr.exe

Find experimental data patterns

    SQL – control+experimental

Ubd_ui1cehr.exe

Find co+ex data patterns

    Standardized paper - control

Elec_c1.exe

Standardized paper

    Standardized paper - experimental

Elec_e1.exe

Standardized paper

    Read

Read3.pdf

Introduction / Help

4. Citation

 

 

    Blueprint - out

Conrep_outhr.exe

View blueprint

    Blueprint – sql

Ubd_core_out.exe

Search the blueprint

    Read

Read4.pdf

Introduction / Help

5. Mathematical Phenotypes

 

 

    Phenotype

Cluster5.exe

View trees (dendrograms)

    Read

Read5.pdf

Introduction / Help

6. Add New Data

 

 

    Add data pair data

Universal_inhr.exe

Add data pair data

    Add blueprint data

Conrephr.exe

Add blueprint data

    Hierarchy

Ubd_sort_hierhr.exe

View data input hierarchies

    Calculations

Graphics_toolhr

Convert graphs into numbers

    Read

Read6.pdf

Introduction / Help

7. Rule Book

 

 

    Rule book

Rule_book_1.pdf

View the Rule Book

    Concentration trap

Da01_outhr.exe

Explore concentration data

    Read

Read7.pdf

Introduction / Help

8. Setup

 

 

    Install reader

W_adobe_reader

Install Adobe Reader

 

AdbeRdr812_en_US.exe

Install reader for Adobe Acrobat 8.0

 

Microsoft WSE 3.0 Runtime.msi

May be needed to install - Reader 8.0

 

dotnetfx.exe

May be needed to install - WSE 3.0

 

WindowsInstaller-KB884016-v2-x86

May be needed to install - dotnetfx

    Installation

Readme_install_2007.pdf

Installation directions

    Read

Read8.pdf

Introduction / Help

Files

·    Readme_license_2007.pdf

Single user license

 

Database Name

Database (.db)

Upgrade

Biology Literature

Issb_pc.db

·    Includes Stereology Literature Database and Universal Biology Database

 

Credits

 

Development Platform

·        Powerbuilder, Sybase Incorporated, Dublin, CA. 

 

Viewer

·        The runtime reader Acrobat (8.0) is made available as a courtesy of Adobe Systems Incorporated, San Jose, CA. 

 

Software Duplication

·        The CD-ROM disc was replicated by Diversified Systems Group, Incorporated, Redmond, WA.

 

Disclaimer

The author makes no claims of usability, efficacy, or warranty.  The SOFTWARE LICENSE AGREEMENT completely defines the licensed use of this software.

Information in this document is provided in connection with this product.  No license, express or implied, or otherwise, to any intellectual property rights is granted by this document.  The author assumes no liability whatsoever, and disclaims any express or implied warranty relating to use of this product, including liability or warranties relating to fitness for a particular purpose, infringement of any patent, copyright, or other intellectual property right.  The software is not intended for use in medical, life saving, or life-sustaining applications.

The author disclaims all warranties and liabilities for the use of this document and the information contained herein, and assumes no responsibility for any errors that may appear in this document, nor does the author make a commitment to update the information contained herein.  The author reserves the right to make changes to this document at any time, without notice.

© Copyright 1994-1997 Robert P. Bolender and the University of Washington 

© Copyright 2001-2008 Robert P. Bolender and Licensors 

All rights reserved.

 

NOTICE OF PROPRIETARY RIGHTS

The Enterprise Biology Software and documentation are the property of Robert P. Bolender.  Use, examination, reproduction, copying, disassembly, decompilation, transfer to others, in whole or in part, are strictly prohibited except the express prior written consent of Robert P. Bolender.

readme_install_2007.pdf

March 15, 2008