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Why?
Why do we want biology to become a mathematical
science? It's the quickest way of
finding out how biology plays by the rules. Consider our
options. We can either derive biology from first principles or
we can discover these principles by reverse engineering. The
second choice, which comes from a data-driven biology, is the easier
of the two options because we already know how to do it.
How do we reverse engineer biology? We need to find the
most effective data in the literature, move them into a relational
database, and standardize them. Next, we minimize methodological
biases and animal variability by forming data ratios, fit these
ratios to equations, and then use the equations - as working rules -
to assemble biological blueprints or to engineer (reverse or
forward) biology.
Although this plan may seem overly simple, it none-the-less is
proving to be quite effective at delivering the desired outcomes.
We now know how to predict biology - upstream and down - from a
single seed value, to reverse and forward engineer biological parts,
and to assemble a blueprint that shows the stoichiometry of the
parts as ratios of small whole numbers.
By constructing a biological blueprint spanning 14 levels
of the structural hierarchy, we can see exactly how biology
assembles its parts by rule. Moreover, by leveraging the clues
coming from the first 14 levels, the remaining two levels (molecules
and genes) can now be captured with hybrid hierarchy equations.
What does this mean? It tells us that we now have a workable
strategy for forward and reverse engineer biology from one end of
the hierarchy to the other - creating a free flow of information
from genes to organisms. In effect, this platform becomes a
promising candidate for a mathematical systems biology. |